About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10490277_10567165_R

Intron Information:

Intron Rank:
140494
Intron Class:
major
Intron Phase:
Intron Coordinates:
10490277 - 10567165
Intron Length:
76889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTGC
5'SS Class:
major
3'SS Sequence:
TTTGACTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTCTCTTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
58.3
41.8
Major BPS
79
0.72
1
69
38.9
Major PPT
80.5
0.69
0.9
74
36.3
Minor 5ss
35.4
-1.7
3.5
50.3
46.3
Minor BPS
81.5
1.07
1
90.84
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022967
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032244
10475196 - 10617503
142308