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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10636819_10637054_F

Intron Information:

Intron Rank:
130842
Intron Class:
major
Intron Phase:
Intron Coordinates:
10636819 - 10637054
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAAGAAA
5'SS Class:
major
3'SS Sequence:
TTCCTCCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGATAAA
U12 Branch Point Sequence:
TCCTCCTCATAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.1
62.3
37.8
Major BPS
48.3
-0.1
1.3
50
42.2
Major PPT
77.1
0.61
0.7
72.5
25.8
Minor 5ss
33.1
-1.9
3.3
44.5
44.4
Minor BPS
47
-0.3
2
52.64
47.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020252
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022076
10635787 - 10637061
1275