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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10725098_10728999_F

Intron Information:

Intron Rank:
132163
Intron Class:
major
Intron Phase:
Intron Coordinates:
10725098 - 10728999
Intron Length:
3902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CCCATCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TCCTCCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
69.9
0.45
0.8
60.8
35.1
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
68.4
0.66
1.6
79.24
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021021
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018319
10724916 - 10729040
4125