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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10725098_10814340_F

Intron Information:

Intron Rank:
132167
Intron Class:
major
Intron Phase:
Intron Coordinates:
10725098 - 10814340
Intron Length:
89243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.5
0.82
0.7
86
26.8
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021021
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042449
10724916 - 10814450
89535