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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10920784_10921303_F

Intron Information:

Intron Rank:
132165
Intron Class:
major
Intron Phase:
Intron Coordinates:
10920784 - 10921303
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTCTTTTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
85.4
0.8
0.8
79.9
32.1
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
66.2
0.59
1.4
79.72
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021021
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036449
10912894 - 10931633
18740