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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10921350_10930511_F

Intron Information:

Intron Rank:
132166
Intron Class:
major
Intron Phase:
Intron Coordinates:
10921350 - 10930511
Intron Length:
9162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTACTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCTTTCTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
77.7
31.2
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
86.3
0.82
0.8
80.7
30.9
Minor 5ss
42.6
-0.8
3.1
56.7
42.1
Minor BPS
69.1
0.68
1.6
82.74
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021021
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036449
10912894 - 10931633
18740