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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11038338_11038806_F

Intron Information:

Intron Rank:
151344
Intron Class:
major
Intron Phase:
Intron Coordinates:
11038338 - 11038806
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
84.2
27.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.3
0.75
0.8
81.8
35.1
Minor 5ss
44.8
-0.6
2.8
61.7
43.1
Minor BPS
75.1
0.86
1.2
87.12
31.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031241
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034067
11038228 - 11040131
1904