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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11038912_11040065_F

Intron Information:

Intron Rank:
151345
Intron Class:
major
Intron Phase:
Intron Coordinates:
11038912 - 11040065
Intron Length:
1154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88.1
0.86
0.6
81.6
30.5
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031241
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034067
11038228 - 11040131
1904