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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11044377_11073985_F

Intron Information:

Intron Rank:
132667
Intron Class:
major
Intron Phase:
Intron Coordinates:
11044377 - 11073985
Intron Length:
29609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTGTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCATAAT
U12 Branch Point Sequence:
GGATCCATAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
84.6
33.2
Major BPS
62.9
0.32
1.2
63.9
38.4
Major PPT
89
0.88
0.8
88.7
28.3
Minor 5ss
41.9
-0.9
3.1
59.6
38.8
Minor BPS
60.4
0.31
1.6
66.36
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021302
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026793
11043848 - 11074023
30176