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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1116696_1120629_R

Intron Information:

Intron Rank:
131959
Intron Class:
major
Intron Phase:
Intron Coordinates:
1116696 - 1120629
Intron Length:
3934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TGTTACTAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
84.7
0.78
0.7
77.6
31.2
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
57.5
0.31
2
79.4
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018226
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027745
1115745 - 1121233
5489