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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11287109_11386125_R

Intron Information:

Intron Rank:
149656
Intron Class:
major
Intron Phase:
Intron Coordinates:
11287109 - 11386125
Intron Length:
99017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
CCATCTGCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTAATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
66.5
40.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
67.5
0.39
0.9
61.6
34.7
Minor 5ss
43.5
-0.7
2.8
62.6
42
Minor BPS
49.6
0.05
1.6
64.36
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028045
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044900
11250754 - 11411872
161119