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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1130274_1130881_F

Intron Information:

Intron Rank:
147846
Intron Class:
major
Intron Phase:
Intron Coordinates:
1130274 - 1130881
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGC
5'SS Class:
major
3'SS Sequence:
TCTGCTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
TGCCCTGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
65.2
40.3
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
79.8
0.67
0.8
73.5
31.5
Minor 5ss
29.4
-2.4
3.5
41.3
45.4
Minor BPS
51.9
0.06
2
65.16
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029576
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037245
1130082 - 1132387
2306