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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1142450_1142711_R

Intron Information:

Intron Rank:
148257
Intron Class:
major
Intron Phase:
Intron Coordinates:
1142450 - 1142711
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TAGTTAATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
92.9
0.97
0.7
92.3
26.6
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
47.9
-0
1.9
68.62
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027100
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030814
1141210 - 1146426
5217