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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1142893_1146331_R

Intron Information:

Intron Rank:
148258
Intron Class:
major
Intron Phase:
Intron Coordinates:
1142893 - 1146331
Intron Length:
3439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGAGGT
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GTCTTTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
65.9
40.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
86.4
0.82
0.7
85.4
29.4
Minor 5ss
26.3
-2.7
3.3
30
43
Minor BPS
52
0.14
1.7
68.86
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027100
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030814
1141210 - 1146426
5217
ENSAPLT00000044968
1141305 - 1146349
5045