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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11456364_11480875_F

Intron Information:

Intron Rank:
134941
Intron Class:
major
Intron Phase:
Intron Coordinates:
11456364 - 11480875
Intron Length:
24512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATACATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTTCTATACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
84.4
0.85
1
84
34.5
Major PPT
73.9
0.54
0.9
70
34.6
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
55.8
0.26
2
82.07
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022588
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041498
11455902 - 11480999
25098