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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11535634_11536621_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11535634 - 11536621
Intron Length:
988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGCAT
U12 Branch Point Sequence:
TTTTGTGCATCT
Flanking Amino Acid:
RIQEILNLIKGNLKHVV*
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
59.8
0.25
1.5
71.4
45.1
Major PPT
89.4
0.89
0.6
84.8
22.8
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
42.2
-0.5
2.6
71.47
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006408
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040921
11535246 - 11547426
12181