About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11536209_11536621_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11536209 - 11536621
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
ATTCGTTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATCCAT
U12 Branch Point Sequence:
CATTCCTCCATT
Flanking Amino Acid:
RIQEILNLIKGLFRLWVPAH
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
57.2
0.18
1.3
68.1
38
Major PPT
77.7
0.62
0.9
69.2
41.2
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
53.5
0.19
2
73.19
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006408
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006650
11536150 - 11547426
11277