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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11539035_11539671_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11539035 - 11539671
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTGGAGACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCCAAA
U12 Branch Point Sequence:
TCTTCCAAAATC
Flanking Amino Acid:
WQLATLVLGGGGYNLANTAR
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
62.7
0.32
1.2
71
33.2
Major PPT
58
0.18
1.2
53.5
45.2
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
56.4
0.18
2
70.88
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006408
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040921
11535246 - 11547426
12181
ENSAPLT00000006650
11536150 - 11547426
11277