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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11545610_11546115_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11545610 - 11546115
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGACA
5'SS Class:
major
3'SS Sequence:
CTCTCACCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TGGCTCTCACCC
Flanking Amino Acid:
DHPESVEYGLGYDCPATEGI
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
68.4
38.2
Major BPS
72.7
0.56
1
75
30.1
Major PPT
72.3
0.5
0.8
65.9
28.9
Minor 5ss
26.7
-2.7
2.9
23.7
36.8
Minor BPS
46.9
-0.2
1.8
56.45
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006408
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040921
11535246 - 11547426
12181
ENSAPLT00000006650
11536150 - 11547426
11277