Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11547228_11547342_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11547228 - 11547342

Intron Length:

115

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTCAGCGCC

5'SS Class:

major

3'SS Sequence:

CCTGGTTTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

TGTTTTTTAACT

Flanking Amino Acid:

CDALCKAPRRASMVHSLIEA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.7

0.32

1.4

59.1

41.4

Major BPS

87.3

0.93

0.8

36.5

Major PPT

78.6

0.64

0.9

Minor 5ss

32.6

-2

3.2

41.1

Minor BPS

1.11

92.13

30.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006408

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040921

11535246 - 11547426

12181

ENSAPLT00000006650

11536150 - 11547426

11277