About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11548836_11548976_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11548836 - 11548976
Intron Length:
141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGGT
5'SS Class:
major
3'SS Sequence:
TCCCTCCACGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAC
U12 Branch Point Sequence:
CCTCCCTCCACG
Flanking Amino Acid:
FVLPSSTTREMTPGEIKFAV
Intron Amino Acid Position:
1087

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
69.2
38.8
Major BPS
62.7
0.32
1.2
64
39.8
Major PPT
70.4
0.46
0.8
65.3
29.3
Minor 5ss
29.5
-2.3
3.8
46.4
49
Minor BPS
47
-0.3
2.1
52.75
47.6

Associated Gene:

Gene:
PHKA1
Ensembl Gene ID:
ENSAPLG00000005017
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029202
11547621 - 11561933
14313
ENSAPLT00000028783
11547621 - 11561933
14313
ENSAPLT00000019942
11547621 - 11561933
14313
ENSAPLT00000005286
11547621 - 11561933
14313
ENSAPLT00000032389
11547621 - 11561933
14313