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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11548836_11549532_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11548836 - 11549532
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCCACGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAC
U12 Branch Point Sequence:
CCTCCCTCCACG
Flanking Amino Acid:
YQKVWKILQKMTPGEIKFAV
Intron Amino Acid Position:
1069

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
62.7
0.32
1.2
64
39.8
Major PPT
70.4
0.46
0.8
65.3
29.3
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
47
-0.3
2.1
52.75
47.6

Associated Gene:

Gene:
PHKA1
Ensembl Gene ID:
ENSAPLG00000005017
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038973
11547621 - 11561933
14313