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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11549031_11549532_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11549031 - 11549532
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCACAT
U12 Branch Point Sequence:
GTCTCCACATCT
Flanking Amino Acid:
YQKVWKILQKCHGLSVEGFV
Intron Amino Acid Position:
1069

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
65.1
0.38
1.1
71.2
35.2
Major PPT
85.8
0.81
0.8
80.7
31.4
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
47.8
-0
2.1
70.24
46

Associated Gene:

Gene:
PHKA1
Ensembl Gene ID:
ENSAPLG00000005017
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029202
11547621 - 11561933
14313
ENSAPLT00000028783
11547621 - 11561933
14313
ENSAPLT00000019942
11547621 - 11561933
14313
ENSAPLT00000005286
11547621 - 11561933
14313
ENSAPLT00000032389
11547621 - 11561933
14313