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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11549704_11549950_R

Intron Information:

Intron Rank:
29
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11549704 - 11549950
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAACCTCC
5'SS Class:
weak_major
3'SS Sequence:
TTTGTCTGCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TGGTCCTTGTTT
Flanking Amino Acid:
SGDGDLMSSLSTGHSELLGK
Intron Amino Acid Position:
1012

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
59.4
40.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
76.2
0.59
1
69.3
41.7
Minor 5ss
52.9
0.1
2.4
65.8
40.5
Minor BPS
46.6
-0.1
3.5
75.4
42

Associated Gene:

Gene:
PHKA1
Ensembl Gene ID:
ENSAPLG00000005017
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032389
11547621 - 11561933
14313
ENSAPLT00000029202
11547621 - 11561933
14313
ENSAPLT00000019942
11547621 - 11561933
14313
ENSAPLT00000005286
11547621 - 11561933
14313
ENSAPLT00000038973
11547621 - 11561933
14313