About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11549996_11550921_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11549996 - 11550921
Intron Length:
926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGCCA
5'SS Class:
major
3'SS Sequence:
TTTTCTCCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
CACGGTTTGATT
Flanking Amino Acid:
KRRQSLTGSKPISLQSGDGD
Intron Amino Acid Position:
997

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
61.7
38.5
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
84.9
0.78
0.7
77.7
31
Minor 5ss
24.9
-2.9
3.1
30.5
42.8
Minor BPS
44.9
-0.3
1.8
54.29
42.7

Associated Gene:

Gene:
PHKA1
Ensembl Gene ID:
ENSAPLG00000005017
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038973
11547621 - 11561933
14313
ENSAPLT00000032389
11547621 - 11561933
14313
ENSAPLT00000019942
11547621 - 11561933
14313
ENSAPLT00000005286
11547621 - 11561933
14313