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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11551413_11551706_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11551413 - 11551706
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACCCAC
U12 Branch Point Sequence:
TGGGACCCACTC
Flanking Amino Acid:
SGKEFGVEKSVRSVDSSVTT
Intron Amino Acid Position:
945

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
44.8
-0.3
1.3
50.1
36.7
Major PPT
77
0.61
0.7
69
31.5
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
35
-1.1
2
40.82
39.1

Associated Gene:

Gene:
PHKA1
Ensembl Gene ID:
ENSAPLG00000005017
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028783
11547621 - 11561933
14313
ENSAPLT00000019942
11547621 - 11561933
14313
ENSAPLT00000038973
11547621 - 11561933
14313
ENSAPLT00000005286
11547621 - 11561933
14313
ENSAPLT00000032389
11547621 - 11561933
14313
ENSAPLT00000029202
11547621 - 11561933
14313