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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11551809_11552089_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11551809 - 11552089
Intron Length:
281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACGTGTG
5'SS Class:
major
3'SS Sequence:
CTGTTGTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
ACGTCCCCACTC
Flanking Amino Acid:
TELAHSLRCSAGEATENLMN
Intron Amino Acid Position:
911

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
67.3
44.3
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
73.6
0.53
0.9
65.2
41.2
Minor 5ss
34.8
-1.7
3.4
40.1
45.9
Minor BPS
42.3
-0.6
2
49.33
41.4

Associated Gene:

Gene:
PHKA1
Ensembl Gene ID:
ENSAPLG00000005017
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029202
11547621 - 11561933
14313
ENSAPLT00000028783
11547621 - 11561933
14313
ENSAPLT00000019942
11547621 - 11561933
14313
ENSAPLT00000038973
11547621 - 11561933
14313
ENSAPLT00000005286
11547621 - 11561933
14313
ENSAPLT00000032389
11547621 - 11561933
14313