Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11553403_11553619_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11553403 - 11553619

Intron Length:

217

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTGAGTCAC

5'SS Class:

major

3'SS Sequence:

GTCTGCCTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GAGAAAT

U12 Branch Point Sequence:

AATGCCTGCACC

Flanking Amino Acid:

ASKAKDLHVQNVGMYVPSKI

Intron Amino Acid Position:

684

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.5

0.48

62.1

38.7

Major BPS

46.7

-0.2

1.3

41.5

Major PPT

77.6

0.62

0.9

73.3

37.2

Minor 5ss

30.3

-2.2

2.8

32.1

35.9

Minor BPS

-0

62.98

42.1

Associated Gene:

Gene:

PHKA1

Ensembl Gene ID:

ENSAPLG00000005017

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029202

11547621 - 11561933

14313

ENSAPLT00000028783

11547621 - 11561933

14313

ENSAPLT00000019942

11547621 - 11561933

14313

ENSAPLT00000038973

11547621 - 11561933

14313

ENSAPLT00000005286

11547621 - 11561933

14313

ENSAPLT00000032389

11547621 - 11561933

14313