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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11555640_11555823_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11555640 - 11555823
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTGAC
U12 Branch Point Sequence:
TCTGGGTGACCT
Flanking Amino Acid:
KLQDGYFGGARIQTGKLSEF
Intron Amino Acid Position:
598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.1
34.7
Major BPS
45.4
-0.2
1.4
34.5
43.7
Major PPT
78.6
0.64
0.9
72.3
37.7
Minor 5ss
31.2
-2.2
3.2
38.8
46.5
Minor BPS
38.2
-0.8
2.6
59.75
49.5

Associated Gene:

Gene:
PHKA1
Ensembl Gene ID:
ENSAPLG00000005017
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028783
11547621 - 11561933
14313
ENSAPLT00000019942
11547621 - 11561933
14313
ENSAPLT00000005286
11547621 - 11561933
14313
ENSAPLT00000038973
11547621 - 11561933
14313
ENSAPLT00000029202
11547621 - 11561933
14313