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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11556618_11556770_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11556618 - 11556770
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
GCTTGCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCACAT
U12 Branch Point Sequence:
CCGCTCACATCT
Flanking Amino Acid:
RKNIFTFTPQFIDQQQFYLA
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
67.2
38.1
Major BPS
65.3
0.38
1.1
72.6
33.1
Major PPT
69.5
0.44
0.9
62
34.8
Minor 5ss
26.2
-2.7
3.2
34.3
42
Minor BPS
39.2
-0.7
1.9
49.78
43.8

Associated Gene:

Gene:
PHKA1
Ensembl Gene ID:
ENSAPLG00000005017
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029202
11547621 - 11561933
14313
ENSAPLT00000028783
11547621 - 11561933
14313
ENSAPLT00000019942
11547621 - 11561933
14313
ENSAPLT00000038973
11547621 - 11561933
14313
ENSAPLT00000005286
11547621 - 11561933
14313
ENSAPLT00000032389
11547621 - 11561933
14313