About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11556881_11557489_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11556881 - 11557489
Intron Length:
609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCCGC
5'SS Class:
major
3'SS Sequence:
CCTTTTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATAAAA
U12 Branch Point Sequence:
GATGCCATAAAA
Flanking Amino Acid:
RILSHIYARLGRNKQMCLTG
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
54.1
45.2
Major BPS
53
0.08
1
60.9
31.3
Major PPT
80.5
0.69
0.7
72.9
32
Minor 5ss
32.3
-2
3
33.6
41.9
Minor BPS
51.7
0.05
1.8
64.13
41.3

Associated Gene:

Gene:
PHKA1
Ensembl Gene ID:
ENSAPLG00000005017
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028783
11547621 - 11561933
14313
ENSAPLT00000019942
11547621 - 11561933
14313
ENSAPLT00000038973
11547621 - 11561933
14313
ENSAPLT00000005286
11547621 - 11561933
14313
ENSAPLT00000032389
11547621 - 11561933
14313
ENSAPLT00000029202
11547621 - 11561933
14313