Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11558143_11558368_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11558143 - 11558368

Intron Length:

226

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGGGCC

5'SS Class:

major

3'SS Sequence:

GCTTCTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAC

U12 Branch Point Sequence:

CCCTGTTTACCT

Flanking Amino Acid:

PELYSVPPDKVDEEYRNPHT

Intron Amino Acid Position:

380

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.6

0.58

65.5

34.2

Major BPS

71.4

0.53

1.1

63.4

Major PPT

82.9

0.74

0.8

76.8

31.8

Minor 5ss

23.6

-3

3.5

32.2

42.8

Minor BPS

47.5

-0.1

2.1

62.23

48.4

Associated Gene:

Gene:

PHKA1

Ensembl Gene ID:

ENSAPLG00000005017

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029202

11547621 - 11561933

14313

ENSAPLT00000028783

11547621 - 11561933

14313

ENSAPLT00000019942

11547621 - 11561933

14313

ENSAPLT00000038973

11547621 - 11561933

14313

ENSAPLT00000005286

11547621 - 11561933

14313

ENSAPLT00000032389

11547621 - 11561933

14313