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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11559516_11559711_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11559516 - 11559711
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
GCCCTGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCGCAC
U12 Branch Point Sequence:
TGGAGCGCACGC
Flanking Amino Acid:
LNASSVGMAKAALEALDELD
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
44.5
-0.3
1.3
48.8
38.1
Major PPT
72.1
0.5
0.9
64.5
36.5
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
28.6
-1.6
2.3
35.35
41.1

Associated Gene:

Gene:
PHKA1
Ensembl Gene ID:
ENSAPLG00000005017
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028783
11547621 - 11561933
14313
ENSAPLT00000019942
11547621 - 11561933
14313
ENSAPLT00000038973
11547621 - 11561933
14313
ENSAPLT00000005286
11547621 - 11561933
14313
ENSAPLT00000032389
11547621 - 11561933
14313
ENSAPLT00000029202
11547621 - 11561933
14313