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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11560002_11560284_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11560002 - 11560284
Intron Length:
283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACGCTG
5'SS Class:
major
3'SS Sequence:
CCCCCTGGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
ATAATTTGAATT
Flanking Amino Acid:
LLMLAQMTASGLHIIHSLDE
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
60.4
45.8
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
66.6
0.37
1
63.7
36.8
Minor 5ss
34.5
-1.8
3.4
46.7
48.6
Minor BPS
54.1
0.21
1.4
68.46
36.3

Associated Gene:

Gene:
PHKA1
Ensembl Gene ID:
ENSAPLG00000005017
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005286
11547621 - 11561933
14313
ENSAPLT00000032389
11547621 - 11561933
14313
ENSAPLT00000029202
11547621 - 11561933
14313
ENSAPLT00000028783
11547621 - 11561933
14313
ENSAPLT00000019942
11547621 - 11561933
14313
ENSAPLT00000038973
11547621 - 11561933
14313