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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11560817_11561247_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11560817 - 11561247
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGACG
5'SS Class:
major
3'SS Sequence:
CTTCGCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTGAC
U12 Branch Point Sequence:
TTTCCCTTCGCC
Flanking Amino Acid:
DKAKAYELEQSVVKLMRGLL
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67
44.2
Major BPS
45.4
-0.2
1.4
34.5
43.7
Major PPT
76.9
0.61
0.8
69.7
31
Minor 5ss
31.2
-2.2
3.3
39.9
45.9
Minor BPS
45.8
-0.3
3.6
76.03
40.2

Associated Gene:

Gene:
PHKA1
Ensembl Gene ID:
ENSAPLG00000005017
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029202
11547621 - 11561933
14313
ENSAPLT00000028783
11547621 - 11561933
14313
ENSAPLT00000005286
11547621 - 11561933
14313
ENSAPLT00000038973
11547621 - 11561933
14313
ENSAPLT00000032389
11547621 - 11561933
14313