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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11561407_11561518_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11561407 - 11561518
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGCACC
5'SS Class:
major
3'SS Sequence:
CCCCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTTAC
U12 Branch Point Sequence:
TTTTTCTCGGCG
Flanking Amino Acid:
LVQQTILRHQDAVTGLLPAS
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
66
39.9
Major BPS
53.7
0.09
1.4
49.1
46
Major PPT
66.9
0.38
0.7
57.1
27.1
Minor 5ss
34.1
-1.8
3
43.8
43.7
Minor BPS
42.6
-0.7
3.6
66.21
42

Associated Gene:

Gene:
PHKA1
Ensembl Gene ID:
ENSAPLG00000005017
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029202
11547621 - 11561933
14313
ENSAPLT00000028783
11547621 - 11561933
14313
ENSAPLT00000019942
11547621 - 11561933
14313
ENSAPLT00000038973
11547621 - 11561933
14313
ENSAPLT00000005286
11547621 - 11561933
14313
ENSAPLT00000032389
11547621 - 11561933
14313