Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11577819_11577925_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11577819 - 11577925

Intron Length:

107

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATC|GTAAGGAGC

5'SS Class:

major

3'SS Sequence:

CCGTGCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAG

U12 Branch Point Sequence:

TGTTCCCCAGCG

Flanking Amino Acid:

DWRCLWCKAIVHSACKELFG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.9

0.35

1.3

60.5

44.3

Major BPS

44.4

-0.3

1.6

54.3

42.9

Major PPT

64.4

0.32

0.9

36.6

Minor 5ss

34.1

-1.8

3.2

43.7

38.3

Minor BPS

47.5

-0.3

2.2

61.84

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002561

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002574

11577699 - 11582124

4426