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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11578935_11579032_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11578935 - 11579032
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
CTGCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCCT
U12 Branch Point Sequence:
TCCTCCTGCCCT
Flanking Amino Acid:
FDLMNGGPHLGLRLFQKFST
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
60.2
39.4
Major BPS
32.6
-1
4.2
67.6
40.6
Major PPT
71.8
0.49
0.8
65.7
30.3
Minor 5ss
31.7
-2.1
3.2
34
41.8
Minor BPS
39.6
-0.7
3.6
68.08
48.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002561
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002574
11577699 - 11582124
4426