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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11579142_11579252_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11579142 - 11579252
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
CCCCGTCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACCCAA
U12 Branch Point Sequence:
CCAGGCTGAGCC
Flanking Amino Acid:
EIDALGLHKQCQLGVLPLGT
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
59.5
39.8
Major BPS
47.2
-0.1
1.1
54
32.5
Major PPT
67.4
0.39
0.8
60.5
29.4
Minor 5ss
35.4
-1.7
3
43.7
37.6
Minor BPS
39.9
-0.7
2
43.45
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002561
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002574
11577699 - 11582124
4426