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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11579393_11579493_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11579393 - 11579493
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGAAA
5'SS Class:
major
3'SS Sequence:
CTCTGCTCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGGCAT
U12 Branch Point Sequence:
ACGCAGGCATCC
Flanking Amino Acid:
LERATTKMLDRWSVMTYEAP
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
71.3
35.7
Major BPS
45.9
-0.2
1.4
52.7
43.2
Major PPT
69.3
0.43
1
65.1
36.3
Minor 5ss
26.6
-2.7
3
31.2
42.7
Minor BPS
26.4
-1.8
2.3
30.98
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002561
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002574
11577699 - 11582124
4426