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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11579871_11580006_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11579871 - 11580006
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGGGG
5'SS Class:
major
3'SS Sequence:
CTTCCCTGGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCCCAT
U12 Branch Point Sequence:
CCCCCCCCAATG
Flanking Amino Acid:
DKHSVVISSAKFLCGTVNDF
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
61.5
43.4
Major BPS
54.5
0.11
1.4
66.4
42.2
Major PPT
67.8
0.4
1
64.9
36.3
Minor 5ss
30.3
-2.3
3.5
37.7
41.5
Minor BPS
42.7
-0.6
1.9
41.35
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002561
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002574
11577699 - 11582124
4426