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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11581299_11581535_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11581299 - 11581535
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGCTGC
5'SS Class:
major
3'SS Sequence:
CTGCGCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAG
U12 Branch Point Sequence:
CCCCGCTCAGCC
Flanking Amino Acid:
NKRDEHPKKCSSRTKNMMWY
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.3
56.2
44
Major BPS
47.4
-0.1
1.6
54.7
43.1
Major PPT
65.5
0.35
0.9
58
33.2
Minor 5ss
39.2
-1.2
3.1
50.9
45.7
Minor BPS
40
-0.7
2
43.44
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002561
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002574
11577699 - 11582124
4426