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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11584484_11584555_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11584484 - 11584555
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAG
U12 Branch Point Sequence:
AGCTCTAAGACC
Flanking Amino Acid:
LKAVRTKYSHRLFFEVAKMT
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
58.2
0.2
1.5
67.3
37.8
Major PPT
89
0.88
0.7
81.1
30.9
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
44.7
-0.4
1.9
53.23
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002458
11584414 - 11587007
2594
ENSAPLT00000047970
11584235 - 11586992
2758
ENSAPLT00000044171
11584235 - 11586992
2758