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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11584926_11585122_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11584926 - 11585122
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGGCA
5'SS Class:
major
3'SS Sequence:
TTTTTGGCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TGCCACACAAAA
Flanking Amino Acid:
PYRFLRRFAKCARVNMETLT
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
62.8
37.7
Major BPS
54
0.1
1
59.7
32.6
Major PPT
78.3
0.64
0.9
73.2
37.2
Minor 5ss
22.7
-3.1
3.4
29.2
43.6
Minor BPS
40.7
-0.7
1.9
49.94
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047970
11584235 - 11586992
2758
ENSAPLT00000044171
11584235 - 11586992
2758
ENSAPLT00000002458
11584414 - 11587007
2594