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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11585702_11586058_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11585702 - 11586058
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGCGAG
5'SS Class:
major
3'SS Sequence:
CGTGTCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CTCCCCCCAACC
Flanking Amino Acid:
DIFDYMREREENFELNHETL
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
59.3
41.8
Major BPS
72
0.55
1
71.8
31.4
Major PPT
76.7
0.6
0.9
69.4
36.8
Minor 5ss
28.8
-2.4
3.5
36.3
48.1
Minor BPS
48.5
-0.1
1.9
61.18
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044171
11584235 - 11586992
2758