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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11586158_11586296_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11586158 - 11586296
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGAGC
5'SS Class:
major
3'SS Sequence:
CTCCACCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
GCCTCCTCCACC
Flanking Amino Acid:
KDPVPEEPVQAPVLEDIDKE
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.3
58.9
46
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
68.5
0.42
0.8
60.8
29
Minor 5ss
37.1
-1.5
3.3
52.2
44.6
Minor BPS
49.3
-0
2
59.01
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044171
11584235 - 11586992
2758
ENSAPLT00000002458
11584414 - 11587007
2594
ENSAPLT00000047970
11584235 - 11586992
2758