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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11586617_11586734_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11586617 - 11586734
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
ACCCCAAAACCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCAAAA
U12 Branch Point Sequence:
CACCCCAAAACC
Flanking Amino Acid:
KRSAFGDLTNAHKNQAVAGK
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.3
74.9
35.3
Major BPS
47.3
-0.1
1
50.8
30.3
Major PPT
50.9
0.02
1
41.7
35.7
Minor 5ss
31.3
-2.1
3.2
40.8
38.7
Minor BPS
46
-0.3
1.9
53.82
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047970
11584235 - 11586992
2758
ENSAPLT00000002458
11584414 - 11587007
2594