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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11590415_11590551_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11590415 - 11590551
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
TTGCTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATGAAT
U12 Branch Point Sequence:
TTTCCAGGGAAT
Flanking Amino Acid:
YAIQKIKSATKE*
Intron Amino Acid Position:
489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
63.2
42.9
Major BPS
58
0.2
1.3
67.7
36.5
Major PPT
84.8
0.78
0.8
77
37.2
Minor 5ss
27.9
-2.5
3
30.9
36.6
Minor BPS
41.5
-0.5
2.4
68.21
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001287
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026372
11590408 - 11594215
3808
ENSAPLT00000019314
11589408 - 11594235
4828
ENSAPLT00000001312
11590408 - 11594235
3828