Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11591138_11591336_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11591138 - 11591336

Intron Length:

199

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAATTTGG

5'SS Class:

major

3'SS Sequence:

TTGTTCACTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTCAC

U12 Branch Point Sequence:

TGGCCCCTCACA

Flanking Amino Acid:

DPFVLSDYMHGGWYKGPRFS

Intron Amino Acid Position:

364

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

1.1

62.9

44.1

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

80.5

0.69

0.9

74.9

34.7

Minor 5ss

40.1

-1.1

2.8

50.2

46.1

Minor BPS

48.2

-0.1

2.1

62.56

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001287

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026372

11590408 - 11594215

3808

ENSAPLT00000019314

11589408 - 11594235

4828