Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11591409_11591505_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11591409 - 11591505

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGAGCA

5'SS Class:

major

3'SS Sequence:

TGTCTCGTTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GAGCGAT

U12 Branch Point Sequence:

TGTCCTGTGTCT

Flanking Amino Acid:

KKQLRVSYTCVPKQLLEEAG

Intron Amino Acid Position:

340

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

65.2

34.5

Major BPS

43.3

-0.4

1.4

35.9

Major PPT

79.2

0.66

0.9

37.3

Minor 5ss

25.8

-2.8

3.1

31.5

42.2

Minor BPS

37.8

-0.8

3.7

68.99

42.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001287

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001312

11590408 - 11594235

3828

ENSAPLT00000026372

11590408 - 11594215

3808

ENSAPLT00000019314

11589408 - 11594235

4828